常用生物信息学数据库和分析工具网址_精品文档.doc

常用生物信息学数据库和分析工具网址_精品文档.doc

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常用生物信息学数据库和分析工具网址

数据库

因特网网址

网上生物信息学教程

EBI 自修课程

http:

//www.ebi.ac.uk/2can

NCBI自修课程

http:

//www.ncbi.nlm.nih.gov/Education

自修课程

http:

//lectures.molgen.mpg.de/online_lectures.html

生物信息学常问的问题

http:

//bioinformatics.org/faq/

生物信息学机构

NCBI

http:

//www.ncbi.nlm.nih.gov/

InternationalNucleotideSequenceDatabaseCollaboration.

http:

//www.ncbi.nlm.nih.gov/collab/

EBI

http:

//www.ebi.ac.uk/

USDA

http:

//www.nal.usda.gov/

SangerCentre

http:

//genomic.sanger.ac.uk/

北京大学生物信息学中心

数据库信息发布及其它

GenBankReleaseNotes

ftp:

//ncbi.nlm.nih.gov/genbank/gbrel.txt

dbESTsummaryreport

http:

//www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.html

EMBLreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

embl

DDBJreleasenotes

http:

//www.ddbj.nig.ac.jp/ddbjnew/ddbjrelnote.html

Eukaryoticpromoterdatabasereleasenotes

http:

//www.genome.ad.jp/dbget/dbget2.html

SwissProtreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

swissprot

PIRreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

pir

PRFreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

prf

PDBSTRreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

pdbstr

Prositereleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

prosite

PDBreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

pdb

KEGGreleasenotes

http:

//www.genome.ad.jp/dbget-bin/showman?

pathway

核苷酸数据库

GenBank

http:

//www.ncbi.nlm.nih.gov/

dbEST

http:

//www.ncbi.nlm.nih.gov/dbEST/index.html

dbSTS

http:

//www.ncbi.nlm.nih.gov/dbSTS/index.html

dbGSS

http:

//www.ncbi.nlm.nih.gov/dbGSS/index.html

Genome（NCBI）

http:

//www.ncbi.nlm.nih.gov/entrez/query.fcgi?

db=Genome

dbSNP

http:

//www.ncbi.nlm.nih.gov/SNP/

HTGS

http:

//www.ncbi.nlm.nih.gov/HTGS/

UniGene

http:

//www.ncbi.nlm.nih.gov/UniGene/

EMBL核苷酸数据库

http:

//www.ebi.ac.uk/embl

Genome（EBI）

http:

//www.ebi.ac.uk/genomes/

向EMBL数据库提交序列

http:

//www.ebi.ac.uk/embl/Submission/webin.html

DDBJ

http:

//www.ddbj.nig.ac.jp/

PlantRgenedatabase

http:

//www.ncgr.org/rgenes

启动子数据库

Eukaryoticpromoterdatabase

http:

//www.epd.isb-sib.ch

http:

//www.genome.ad.jp/dbget/dbget2.html

转录因子数据库

FRANSFAC

http:

//transfac.gbf.de

ooTFD

http:

//www.ifti.org

基因注释数据库

RAP-DB

http:

//rapdb.lab.nig.ac.jp

基因分类数据库

GeneOntology（GO）

http:

//www.geneontology.org

蛋白质数据库

SWISS-PROT或TrEMBL

http:

//www.ebi.ac.uk/swissprot/

http:

//www.expasy.ch/sprot/

PIR

http:

//pir.georgetown.edu

PRF

http:

//www.kinasenet.org/pkr/Welcome.do

http:

//www.prf.or.jp/

PDBSTR

http:

//www.genome.ad.jp

Prosite

http:

//www.expasy.org/prosite

结构数据库

PDB

http:

//www.rcsb.org/pdb

http:

//www.pdb.org

NDB

http:

//ndbserver.rutgers.edu/NDB/ndb.html

http:

//ndbserver.rutgers.edu/

DNA-BindingProteinDatabase

http:

//ndbserver.rutgers.edu/NDB/structure-finder/dnabind/index.html

NMRNucleicAcidsDatabase

http:

//ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.html

ProteinPlusDatabase

http:

//ndbserver.rutgers.edu/NDB/structure-finder/protein/index.html

Swiss3Dimage

http:

//www.expasy.ch/sw3d/

SCOP

http:

//scop.mrc-lmb.cam.ac.uk/scop/

CATH

http:

//www.biochem.ucl.ac.uk/bsm/cath/

酶、代谢和调控路径数据库

KEGG

http:

//www.genome.ad.jp/kegg/

EnzymeNomenclatureDatabase

http:

//expasy.hcuge.ch/sprot/enzyme.html

ProteinKinaseResource（PKR）

http:

//www.sdsc.edu/kinases/

LIGAND

http:

//www.genome.ad.jp/dbget/ligand.html

WIT

http:

//www.cme.msu.edu/WIT/

EcoCyc

http:

//ecocyc.PangeaS

UM-BBD

http:

//www.labmed.umn.edu/umbbd/

多种代谢路径数据库

http:

//www.unl.edu/stc-95/ResTools/biotools/biotools8.html

基因调控路径数据库（TRANSPATH）

http:

//transfac.gbf.de

基因组数据库

禾本科比较基因组

http:

//www.gramene.org

GrainGene

http:

//www.graingenes.org

BotanicalData

http:

//www.calflora.org/calflora/batanical.html

日本水稻基因组（RGP）

http:

//rgp.dna.affrc.go.jp

水稻物理图谱

http:

//www.genome.clemson.edu/projects/rice/fpc

http:

//www.genome.arizona.edu

华大水稻基因组框架图

欧洲水稻测序（第12染色体）

s.fr

OryGenesDB（水稻插入突变体）

http:

//orygenesdb.cirad.fr

Maizegenome

http:

//www.agron.missouri.edu

Barleygenome

http:

//www.css.orst.edu/Research/barley/nabgmp.htm

Foragegrassesgenomes

http:

//forages.orst.edu/

http:

//www.forages.css.orst.edu/Topics/Species/Grasses/

Triticumgenomes

http:

//wheat.pw.usda.gov/index.shtml

Arabidopsisgenome

http:

//www.arabidopsis.org

SoyBase

http:

//soybase.agron.iastate.edu

Alfalfagenome

http:

//www.alfalfa.ksu.edu

Cottongenome

http:

//cottongenomecenter.ucdavis.edu

Glycinemaxgenome

http:

//www.zmdb.iastate.edu/PlantGDB/glycine_max.html

http:

//www.zmdb.iastate.edu/PlantGDB

C.elegansgenome

http:

//www.acedb.org

藻类（Chlamydomonas）基因组

http:

//www.biology.duke.edu/chlamy_genome

粘菌（Dictyostelium）基因组

http:

//dictygenome.bcm.tmc.edu

Animalgenomes（ArkDB）

http:

//www.thearkdb.org

FlyBase

http:

//flybase.bio.indiana.edu/.bin/fbidq.html?

FBgn0003075

MouseG