常用生物信息学数据库和分析工具网址_精品文档Word文档格式.doc
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//www.ebi.ac.uk/
USDA
//www.nal.usda.gov/
SangerCentre
//genomic.sanger.ac.uk/
北京大学生物信息学中心
数据库信息发布及其它
GenBankReleaseNotes
ftp:
//ncbi.nlm.nih.gov/genbank/gbrel.txt
dbESTsummaryreport
//www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.html
EMBLreleasenotes
//www.genome.ad.jp/dbget-bin/showman?
embl
DDBJreleasenotes
//www.ddbj.nig.ac.jp/ddbjnew/ddbjrelnote.html
Eukaryoticpromoterdatabasereleasenotes
//www.genome.ad.jp/dbget/dbget2.html
SwissProtreleasenotes
swissprot
PIRreleasenotes
pir
PRFreleasenotes
prf
PDBSTRreleasenotes
pdbstr
Prositereleasenotes
prosite
PDBreleasenotes
pdb
KEGGreleasenotes
pathway
核苷酸数据库
GenBank
dbEST
//www.ncbi.nlm.nih.gov/dbEST/index.html
dbSTS
//www.ncbi.nlm.nih.gov/dbSTS/index.html
dbGSS
//www.ncbi.nlm.nih.gov/dbGSS/index.html
Genome(NCBI)
//www.ncbi.nlm.nih.gov/entrez/query.fcgi?
db=Genome
dbSNP
//www.ncbi.nlm.nih.gov/SNP/
HTGS
//www.ncbi.nlm.nih.gov/HTGS/
UniGene
//www.ncbi.nlm.nih.gov/UniGene/
EMBL核苷酸数据库
//www.ebi.ac.uk/embl
Genome(EBI)
//www.ebi.ac.uk/genomes/
向EMBL数据库提交序列
//www.ebi.ac.uk/embl/Submission/webin.html
DDBJ
//www.ddbj.nig.ac.jp/
PlantRgenedatabase
//www.ncgr.org/rgenes
启动子数据库
Eukaryoticpromoterdatabase
//www.epd.isb-sib.ch
转录因子数据库
FRANSFAC
//transfac.gbf.de
ooTFD
//www.ifti.org
基因注释数据库
RAP-DB
//rapdb.lab.nig.ac.jp
基因分类数据库
GeneOntology(GO)
//www.geneontology.org
蛋白质数据库
SWISS-PROT或TrEMBL
//www.ebi.ac.uk/swissprot/
//www.expasy.ch/sprot/
PIR
//pir.georgetown.edu
PRF
//www.kinasenet.org/pkr/Welcome.do
//www.prf.or.jp/
PDBSTR
//www.genome.ad.jp
Prosite
//www.expasy.org/prosite
结构数据库
PDB
//www.rcsb.org/pdb
//www.pdb.org
NDB
//ndbserver.rutgers.edu/NDB/ndb.html
//ndbserver.rutgers.edu/
DNA-BindingProteinDatabase
//ndbserver.rutgers.edu/NDB/structure-finder/dnabind/index.html
NMRNucleicAcidsDatabase
//ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.html
ProteinPlusDatabase
//ndbserver.rutgers.edu/NDB/structure-finder/protein/index.html
Swiss3Dimage
//www.expasy.ch/sw3d/
SCOP
//scop.mrc-lmb.cam.ac.uk/scop/
CATH
//www.biochem.ucl.ac.uk/bsm/cath/
酶、代谢和调控路径数据库
KEGG
//www.genome.ad.jp/kegg/
EnzymeNomenclatureDatabase
//expasy.hcuge.ch/sprot/enzyme.html
ProteinKinaseResource(PKR)
//www.sdsc.edu/kinases/
LIGAND
//www.genome.ad.jp/dbget/ligand.html
WIT
//www.cme.msu.edu/WIT/
EcoCyc
//ecocyc.PangeaS
UM-BBD
//www.labmed.umn.edu/umbbd/
多种代谢路径数据库
//www.unl.edu/stc-95/ResTools/biotools/biotools8.html
基因调控路径数据库(TRANSPATH)
基因组数据库
禾本科比较基因组
//www.gramene.org
GrainGene
//www.graingenes.org
BotanicalData
//www.calflora.org/calflora/batanical.html
日本水稻基因组(RGP)
//rgp.dna.affrc.go.jp
水稻物理图谱
//www.genome.clemson.edu/projects/rice/fpc
//www.genome.arizona.edu
华大水稻基因组框架图
欧洲水稻测序(第12染色体)
s.fr
OryGenesDB(水稻插入突变体)
//orygenesdb.cirad.fr
Maizegenome
//www.agron.missouri.edu
Barleygenome
//www.css.orst.edu/Research/barley/nabgmp.htm
Foragegrassesgenomes
//forages.orst.edu/
//www.forages.css.orst.edu/Topics/Species/Grasses/
Triticumgenomes
//wheat.pw.usda.gov/index.shtml
Arabidopsisgenome
//www.arabidopsis.org
SoyBase
//soybase.agron.iastate.edu
Alfalfagenome
//www.alfalfa.ksu.edu
Cottongenome
//cottongenomecenter.ucdavis.edu
Glycinemaxgenome
//www.zmdb.iastate.edu/PlantGDB/glycine_max.html
//www.zmdb.iastate.edu/PlantGDB
C.elegansgenome
//www.acedb.org
藻类(Chlamydomonas)基因组
//www.biology.duke.edu/chlamy_genome
粘菌(Dictyostelium)基因组
//dictygenome.bcm.tmc.edu
Animalgenomes(ArkDB)
//www.thearkdb.org
FlyBase
//flybase.bio.indiana.edu/.bin/fbidq.html?
FBgn0003075
MouseG