PVY全基因组Word下载.docx

1、 ORGANISM Potato virus Y Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus.REFERENCE 1 AUTHORS Chikh Ali,M., Maoka,T. and Natsuaki,K.T. TITLE A point mutation changes the serotype of a potato virus Y isolate; genomic determination of the serotype of PVY strains JOURNAL Vir

2、us Genes 35 （2）, 359-367 （2007） PUBMED 17564823REFERENCE 2 （bases 1 to 9698） AUTHORS Chikh Ali,M.S., Maoka,T. and Natsuaki,K.T. TITLE Direct Submission JOURNAL Submitted （27-JUL-2004） Contact:Mohamad S Chikh Ali Laboratory of Plant Pathology, Faculty of Agriculture, Utsunomiya University; Mine-machi

3、 350, Utsunomiya 321-8505, JapanCOMMENT On Sep 26, 2007 this sequence version replaced gi:154240660.FEATURES Location/Qualifierssource 1.9698 /organism=Potato virus Y /mol_type=genomic RNA /isolate=PVY-12 /isolation_source=potato /db_xref=taxon:12216 /lab_host=Nicotiana tabacum cv. Samsun /country=S

4、yria: AleppoCDS 185.9370 /codon_start=1 /product=polyprotein precursor /protein_id=BAF74584.2GI:157679489 /translation=MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLE TQLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLERKDREEYHFQMAAPSIV SKITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQMNHLIKQVKQIMST KGGSVQLISKKSTHVHYK

5、EVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLART DKWNNQVRATDLRKGDSGVILSNTNLKGNFGRSSEGLFIVRGSHEGKIYDARSKVTQG VMDSMVQFSSAESFWKGLDGNWAQMRYPTDHTCVAGLPVEDCGRVAAIMTHSILPCYK ITCPTCAQQYANLPASDLLKILHKHASDGLNRLGADKDRFVHVKKFLTILEHLTEPVD LSLEIFNEVFKSIGEKQQSPFKNLNILNNFFLKGKENTAREWQVAQLSLLELARFQKN RTDNIKKGDISFFRNKLSAKANW

6、NLYLSCDNQLDKNANFLWGQREYHAKRFFSNYFEE IDPAKGYSAYENRLHPNGTRKLAIGNLIVPLDLAEFRRKVKGDYKRQPGVSKKCTSSK DGNYVYPCCCTTLDDGSAVESTFYPPTKKHLVIGNSGDQKYVDLPKGNSEMLYIARQG FCYINIFLAMLINISEEDAKDFTKKVRDMCVPKLGTWPTMMDLATTCAQMKIFYPDVH DAELPRILVDHETQTCHVVDSFGSQTTGYHILKASSVSQLILFANDELESDIKHYRVG GIPNACPELGSTISPFREGGVIMSESAA

7、LKLLLKGIFRPKVMRQLLLDEPYLLILSIL SPGILMAMYNNGIFELAVRLWINEKQSIAMIASLLSALALRVSAAETLVAQRIIIDTA ATDLLDATCDGFNLHLTYPTALMVLQVVKNRNECDDTLFKAGFPSYNTSVVQIMEKNY LNLLNDAWKDLTWREKLSATWYSYRAKRSITRYIKPTGRADLKGLYNISPQAFLGRGA QVVKGTASGLSERFNNYFNTKCVNISSFFIRRIFRRLPTFVTFVNSLLVISMLTSVVA VCQAIILDQRKYRREIELMQIEKNEIVCMELYA

8、SLQRKLERDFTWDEYIEYLKSVNPQ IVQFAQAQMEEYDVRHQRSTPGVKNLEQVVAFMALVIMVFDAERSDCVFKTLNKFKGV LSSLDHEVRHQSLDDVIKNFDERNETIDFELSEDTIRTSSVLDTKFSDWWDRQIQMGH TLPHYRTEGHFMEFTRATAVQVANDIAHSEHLDFLVRGAVGSGKSTGLPVHLSVAGSV LLIEPTRPLAENVFKQLSSEPFFKKPTLRMRGNSIFGSSPISVMTSGFALHYFANNRS QLAQFNFVIFDECHVLDPSAMAFRSLLSVYHQACKVLK

9、VSATPVGREVEFTTQQPVKL IVEDTLSFQSFVDAQGSKTNADVVQFGSNVLVYVSSYNEVDTLAKLLTDKNMMVTKVD GRTMKHGCLEIVTKGTSARPHFVVATNIIENGVTLDIDVVVDFGLKVSPFLDIDNRSI AYNKVSVSYGERIQRLGRVGRFKKGVALRIGHTEKGIIEIPSMIATEAALACFAYNLP VMTGGVSTSLIGNCTVRQVKTMQQFELSPFFIQNFVAHDGSMHHVIHDILKKYKLRDC MTPLCDQSIPYRASSTWLSVSEYERLGVALEIPKQVKIAFHIK

10、EIPPKLHEMLWETVV KYKDVCLFPSIRASSISKIAYTLRTDLFAIPRTLILVERLLEEERVKQSQFRSLIDEG CSSMFSIVNLTNTLRARYAKDYTAENIQKLEKVRSQLKEFSNLDGSACEENLIKRYES LQFVHHQAVTSLAKDLKLKGTWKKSLVAKDLIIAGAVAIGGIGLIYSWFTQSVETVSH QGKTKSKRIQALKFRHARDKRAGFEIDNNDDTIEEFFGSAYRKKGKGKGTTVGMGKSS RRFVNMYGFDPTEYSFIQFVDPLTGAQIEENVYADIRDIQERFSDVRK

11、KMVEDDEIEL QALGSNTTIHAYFRKDWSDKALKIDLMPHNPLKICDKSNGIAKFPERELELRQTGPAI EVDVKDIPKQEVEHEAKSLMRGLRDFNPIAQTVCRVKVSVEYGTSEMYGFGFGAYIIV NHHLFKSFNGSMEVRSMHGTFRVKNLHSLSVLPIKGRDIIIIKMPKDFPVFPQKLHFR APVQNERICLVGTNFQEKHASSIITETSTTYNVPGSTFWKHWIETNDGHCGLPVVSTA DGCLVGIHSLANNVQTTNYYSAFDEDFESKYLRTNEHNEWTKSWVYNPDTVLW

12、GPLKL KESTPKGLFKTTKLVQDLIDHDVVVEQAKHSAWMYEALTGNLQAVATMKSQLVTKHVV KGECRHFKEFLSVDSEAEAFFRPLMDAYGKSLLNREAYIKDIMKYSKPIDVGIVDCDA FEEAINRVIIYLQVHGFQKCNYITDEQEIFKALNMKAAVGAMYGGKKKDYFEHFTEAD KEEIVMQSCLRLYKGSLGIWNGSLKAELRCKEKILANKTRTFTAAPLDTLLGGKVCVD DFNNQFYSKNIECCWTVGMTKFYGGWDKLLRRLPENWVYCDADGSQFDSSLTPYLINA

13、 VLIIRSTYMEDWDLGLQMLRNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSL MVVLAMHYALIKECVEFEEIDSTCVFFVNGDDLLIAVNPEKESILDRMSQHFSDLGLN YDFSSRTRRKEELWFMSHRGLLIEGMYVPKLEEERIVSILQWDRADLPEHRLEAICAA MIESWGYFELTHQIRRFYSWLLQQQPFSTIAQEGKAPYIASMALKKLYMDRTVDEEEL KAFTEMMVALDDELECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSIQPNLNKGKEKDV NVGT

14、SGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDT WYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVE NAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSR TPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKN Maattaaaacaactcaatacaacataagaaaaacaacgcaaaaacactcataaacgcttattctcact

15、caagcaacttgctaagtttcagtttaaatcatttccttgcaattctcttgaacgatattggaaaccatttcaactcaacaagtaatttcatcacttccaaccaattttagatcttcaatggcaacttacatgtcaacaatctgtttcggttcgtttgaatgcaagctaccatactcacccgcctcttgcgggcatattgtgaaggaacgagaagtgctggcttccgttgatcctttcgcagatctggaaacacaacttagtgcacgattgctcaagcaagaatatgctactgttcgtgtg

16、ctcaagaacggtactcttacgtaccggtacaagactgatgcccagataacgcgcatccagaagaaactggaaaggaaggatagggaagaatatcacttccaaatggcagctcctagtattgtgtcaaagatcactattgctggtggagagccaccttcaaaacttgaatcacaagtgcggaggggtgtcatccacacaactccaaggatgcgcacagcaaaaacatatcacacgccaaagttgacagagggacaaatgaaccaccttatcaagcaggtgaagcaaattatgtcaaccaaa

17、ggagggtctgttcaactgattagcaagaaaagtacccatgttcactataaagaagttttgggatcacatcgcgcagttgtttgcactgcacatatgagaggtttacgaaagagagtggactttcggtgtgataaatggaccgttgtgcgtctacagcatctcgccaggacagacaagtggaataaccaagttcgtgctactgatctacgcaagggcgatagtggagttatattgagtaatactaatctcaaaggaaactttgggagaagctcggagggcctattcatagtgcgtgggtcg

18、cacgaaggaaaaatctatgatgcacgttccaaggttactcaaggggttatggattcaatggttcagttctcaagcgctgaaagcttttggaagggattggacggcaattgggcacaaatgagatatcctacagatcatacatgtgtggcaggcttaccagttgaagactgcggcagagttgcagcgataatgacacacagtattttaccgtgctataagataacctgccctacctgtgcccaacaatatgccaacttgccagccagtgacttacttaagatattacacaagcacgcaagt

19、gatggtttaaatcggttgggggcagacaaagatcgctttgtgcatgtcaaaaagttcttgacaatcttagagcacttaactgaaccggttgatctgagtctagaaattttcaatgaagtattcaagtctataggggagaagcaacaatcacctttcaaaaacctgaatattctgaataatttctttttgaaaggaaaggaaaatacagctcgtgaatggcaggtggctcaattaagcttacttgaattggcaagattccaaaagaacagaacggataatatcaagaaaggagacatctcg

20、ttctttaggaataaactatctgccaaagcaaattggaacttgtatctgtcatgtgataaccagctggataagaatgcaaacttcctgtggggacagagggaatatcatgctaagcgatttttctcgaactatttcgaggaaattgatccagcgaagggctattcagcatacgaaaatcgtttgcatccgaatgggacaagaaaacttgcaattggaaacctaattgtaccacttgatctggctgagtttaggcggaaggtgaaaggtgattataaaagacagccaggggtgagtaagaag

21、tgcacgagctcgaaggatggaaactacgtgtatccctgttgttgcactacacttgatgatggctcagctgttgaatcaacattttacccgccaactaagaagcacctcgtaataggcaatagtggcgatcaaaagtatgttgacttaccaaaagggaattctgagatgttatatattgccaggcaaggtttctgttacattaacattttcctcgcgatgttgattaacattagtgaggaagatgcaaaggatttcactaagaaggttcgtgacatgtgtgtgccaaagcttggaacctgg

22、ccaaccatgatggatctggctacaacttgtgctcaaatgaaaatattctaccctgatgttcatgatgcagaactgcctagaatactagtcgatcacgaaacgcagacatgccatgtggttgactcgtttggctcacaaacaactgggtatcatattttgaaagcatctagcgtgtcccaacttattttgtttgctaatgatgagttggagtctgacattaagcactatagagttggtggtattcctaatgcatgccctgaacttgggtctacaatatcacctttcagagaaggaggagtt

23、ataatgtctgagtcggcagcgctgaaactgcttttgaagggaatttttagacctaaggtgatgagacagttgctgttagatgagccttacctgttgattctatcaatattatcccctggcatactgatggctatgtacaataatgggatttttgaacttgcggtaaggttgtggattaatgagaaacaatccatagctatgatagcatcgctactatcagctttagccctacgagtgtcagcggcagaaacactcgtcgcacagaggattataattgatactgcagctacagatctcctt

24、gatgctacgtgcgatgggttcaacctacatctaacgtaccccactgcgttgatggtgttgcaagttgttaagaatagaaatgaatgtgatgataccctattcaaggcgggttttccaagttacaacacgagcgtcgtacagatcatggaaaaaaattatctaaatctcttgaacgatgcttggaaagatttaacttggcgggaaaaattatccgcaacatggtactcatacagagcaaaacgctctatcactcggtacataaaacccacaggaagggcagatttgaaagggttatacaac

25、atatcaccacaagcattcttgggccgaggcgcccaggtggtcaaaggcactgcctcaggattgagcgagcgatttaataattatttcaatactaagtgtgtaaatatttcatcctttttcattcgtagaatctttaggcgtttgccaactttcgtcacttttgttaactcattattagttattagtatgttaaccagcgtagtggcagtgtgtcaggcaataattttagatcagaggaagtataggagagaaatcgagttgatgcagatagagaagaatgagatcgtctgcatggagcta

26、tatgcaagtttacagcgcaaacttgaacgcgatttcacatgggatgagtacattgagtatttgaagtcagtaaaccctcagatagttcagtttgctcaagcgcagatggaagaatatgatgtgcgacaccagcgttccacaccaggtgttaaaaatttggaacaagtggtagcatttatggctttagtcatcatggtgttcgatgctgaaaggagtgattgcgtgttcaaaactctcaataaatttaagggtgtcctttcctcactggaccatgaagttagacatcagtccttagacgat

27、gtaatcaagaattttgatgagaggaatgagactattgattttgaattgagtgaggacacaattcgaacatcatcagtgctagatacaaagtttagtgattggtgggaccgacaaatccagatgggtcatacacttccacattacagaaccgaggggcacttcatggagttcacaagagcaactgctgtccaagtggctaatgatatcgctcatagcgaacacctagactttctagtaaggggagctgttgggtctggaaagtcaactgggttgcctgttcatcttagtgtagccggatct

28、gtgcttttaattgaaccaacgcgaccactagcggagaacgttttcaaacagctatctagtgaaccattcttcaagaagccaacactgcgtatgcgtggaaatagtatatttggctcttctccaatctccgtcatgactagcggatttgcgctacactacttcgccaataatcgctctcaattagctcagttcaactttgtgatatttgatgagtgccatgttctggatccttccgcaatggcgttccgcagtctgctgagtgtttatcatcaagcatgcaaagtgttaaaagtgtcagct

29、actccagtaggaagagaggttgaatttacaacacagcaaccagtcaagttaatagtggaggacacactgtctttccaatcatttgttgatgcacaaggttctaaaactaatgctgatgttgttcagtttggttcaaacgtacttgtgtacgtgtcgagctacaatgaagttgacaccttggctaagctcctaacagacaagaatatgatggtcacaaaggttgatggcagaacaatgaagcacggttgcctagaaattgtcacaaaaggaaccagtgcgagaccacattttgttgtagca

30、accaacataattgagaatggagtgactttggacatagacgtggttgtagattttgggttaaaagtctcaccgttcttggacattgacaataggagcattgcttacaataaggtgagtgttagctatggtgagagaattcaaaggctgggtcgtgttggacgcttcaagaaaggagtagcattgcgcattggacacactgagaagggaattattgaaattccaagcatgatcgctacagaggcggctcttgcttgctttgcatataacttgccagtgatgacaggaggcgtctcaactagt

31、ctgattggcaattgtactgtgcgccaagttaaaacaatgcagcaatttgaattgagtcccttctttatccagaatttcgttgcccacgatggatcaatgcatcatgtcatacatgacattcttaaaaagtataaacttcgagattgtatgacacctttgtgcgatcagtctataccatacagggcatcgagcacttggttatcggttagtgaatatgagcgacttggagtggccttagaaattccaaagcaagtcaaaattgcattccatatcaaagagatccctcctaagctccacgaaatgctttgggaaacggttgtcaagtacaaagacgtttgcttatttccaagcattcgagcatcgtccatcagcaaaatcgcatacacattgcgtacagacctcttcgccatcccaagaactctaatattggtggagagactgcttgaagaggagcgagtgaagcagagccaattcagaagtctcatcgacgaaggatgctcaagcatgttttcgattgtcaacttgacaaacactctcagagctagatatgcaaaagattacaccg